|
Microarray Suite analysis of gene regulation in normal vs. tumor cells in response to 18 hr arginine deprivation. |
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| CODE |
CELL TYPE |
ARG STATUS |
ABSENT |
PRESENT |
NET INCREASE |
NET DECREASE |
MARGINAL |
NO CHANGE |
|
|
||||||||
| N1 |
NORMAL |
Arg + |
7189 |
8474 |
||||
| N3 |
" |
Arg + |
7102 |
8536 |
||||
| N5 |
" |
Arg + |
7010 |
8662 |
||||
| N2 |
" |
Arg deficient |
7140 |
8532 |
1242 |
876 |
135 |
6221 |
| N4 |
" |
Arg deficient |
7296 |
8381 |
358 |
136 |
52 |
7990 |
| N6 |
" |
Arg deficient |
6601 |
9082 |
832 |
811 |
105 |
6914 |
| MEAN |
Normal |
7106 |
8611 |
811 |
608 |
97 |
7042 |
|
| AVEDEV |
167 |
174 |
302 |
314 |
30 |
632 |
||
| T1 |
TUMOR |
Arg + |
7085 |
8535 |
||||
| T3 |
" |
Arg + |
7051 |
8607 |
||||
| T5 |
" |
Arg + |
7423 |
8224 |
||||
| T2 |
" |
Arg deficient |
6934 |
8725 |
1514 |
1187 |
119 |
5715 |
| T4 |
" |
Arg deficient |
7664 |
7973 |
1391 |
913 |
117 |
6186 |
| T6 |
" |
Arg deficient |
7573 |
8065 |
843 |
678 |
86 |
6617 |
| MEAN |
Tumor |
7288 |
8355 |
1249 |
926 |
109 |
6173 |
|
| AVEDEV |
265 |
268 |
271 |
174 |
14 |
305 |
||
|
Numbers of rat genes in Affymetrix RAE 230 array demonstrating expression, no change, increase, decrease and marginal change. Change in gene expression based on p value of 0.05 or less in pair-wise comparisons of three independent datasets. RAE 230 array contains 15,923 genes. | ||||||||
Leong et al. Nutrition & Metabolism 2006 3:37 doi:10.1186/1743-7075-3-37 |
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