Table 4

Results of the association test of each SNP against the phenotypic variation residual from the regression of covariates in Table 3. Results significant at alpha ≤ 0.05 are indicated in bold. Also shown are the FDR corrected p-value, the degrees of freedom in the regression model, the regression coefficient indicating the size of the effect of the minor allele, and the minimum effect size for 80% power of detection, relative to the standard deviation.
SNP	Gene	p-value	FDR	degf	coeff	power	SNP type

rs936960	LIPC	0.7354	0.8011	47	0.351	2.08	intron 1
rs417344	LIPC	0.1322	0.5433	48	1.175	1.57	~5.5 kb upstream from LIPC
rs6083	LIPC	0.6944	0.8011	37	-0.226	1.25	S215N
rs295	LPL	0.5519	0.7843	44	-0.526	1.49	intron 6
rs328	LPL	0.1973	0.5744	51	-1.330	1.76	exon 9, *474S
rs10422283	LIPE	0.1610	0.5433	41	0.916	1.24	intron 1
rs1556478	LIPA	0.7417	0.8011	33	0.228	1.29	intron 5
rs6586179	LIPA	0.2575	0.6321	43	-1.189	2.08	exon 1, R23G
rs4245232	LIPG	0.1561	0.5433	43	0.906	1.50	~1.5 kb upstream
rs814628	LIPF	0.0002	0.0059	43	-3.658	1.86	exon 4, Ala161>Thr
rs2287754	GYS1	0.6950	0.8011	33	-0.324	1.51	5' UTR
rs1478290	GYS2	0.4504	0.7843	57	-0.381	1.13	~3.5 Kb upstream
rs1871143	GYS2	0.5236	0.7843	38	-0.381	1.31	intron 11
rs2306179	GYS2	0.0068	0.0610	42	-1.717	1.40	intron 5
rs4688046	GSK3B	0.5148	0.7843	42	-0.382	1.37	intron 3
rs334555	GSK3B	0.4553	0.7843	41	0.925	2.09	intron 1
rs711752	CETP	0.2127	0.5744	44	0.677	1.13	intron 1
rs3764261	CETP	0.6900	0.8011	39	0.263	1.36	~2.6 kb upstream
rs5880	CETP	0.0782	0.4220	42	2.769	2.71	P390A
rs1532624	CETP	0.5299	0.7843	49	0.339	1.12	intron 7
rs5883	CETP	0.0018	0.0237	54	-2.854	1.94	exon 9, synonymous
rs5070	APOA1	0.4406	0.7843	39	-0.454	1.41	Intron
rs4520	APOC3	0.4275	0.7843	36	-0.497	1.32	G34G
rs2071521	APOC3	0.9176	0.9176	43	-0.053	1.13	Upstream
rs694066	GAL	0.0231	0.1557	54	2.105	2.22	intron 1
rs1468271	NPY	0.7401	0.8011	46	-0.378	2.43	intron 1
rs26312	GHRL	0.7832	0.8133	61	0.233	1.50	~1 kb upstream

Ruaño et al. Nutrition & Metabolism 2006 3:20 doi:10.1186/1743-7075-3-20